DoriC

RefSeq

NC_013158.1

DoriC accession number

aORI10010148

OriC length

711 nt

OriC AT content

0.4965

The location of oriC region

1054233..1054943 nt

Browse in NCBI

OriC map

OriC sequences

CAATATTGGACAATACAAAGTCATTATATTTTAATCTATCGACCTCGTACCGAGTGTATACACAGATAAGACGAATACTCCATAAATCAAAGAGCATCAAATCCATTTATATTCAATATTTGTTGGTACACACACCAAGTAACGAGTGAAAGCACAGGAAAACTCACTCAGAGACAGAGTAAAATATCGCTGCCGACGCCACCGACGCTGGACCGGTTCGAGACACAGTGCTTCACTCGGTGCGAGGTGTGGGAGTACCGCTCCAGCCATACCGACGCTGCAGGCTTTCACTCGGTGTGAGGTGTGTCTCACCGCGCCGGCTCTTCCTCAATCATCACGGGAGTTCGACGACTGGCTTCCCGACCCTTCGCGTAATGTCCACTGGTCACACGAAGGTAATCTCAGGGCCTTCCTCAGTAACTCGACCGAGGATGTCGTTGCAGTATTTGGCTTCTCGCCGAGAGAGTGATTTACTCAGTCTGTAACTTGGATCTGTTCGTCCGAATTTCCATGTGTTGATATTTGTATCATCGTGACTTGTGCTGGATCACCAGTCACCTCGGCATACTCTTGTGGCGAGATCCGGAAGACAGTATCTCGCTGACGGGCTTCACGAGCGAGGGCCTGGAACCGTGCACCGCCTCGCCGGCCGCAACTGATAAGAACTGACGAATCAATGAATACGACGTCTCGATTGGGGGCCATTCCGAT

ORB AT-rich region

The information of repeat sequences

Motif GKVATTYACTYGKKGYGAGRTBTGKAWSW

Start	P-value		Site
283	2.26e-13	CGACGCTGCA	GGCTTTCACTCGGTGTGAGGTGTGTCTCA	CCGCGCCGGC
228	3.08e-12	TCGAGACACA	GTGCTTCACTCGGTGCGAGGTGTGGGAGT	ACCGCTCCAG
562	6.40e-11	CAGTCACCTC	GGCATACTCTTGTGGCGAGATCCGGAAGA	CAGTATCTCG
466	1.01e-10	CGCCGAGAGA	GTGATTTACTCAGTCTGTAACTTGGATCT	GTTCGTCCGA
502	2.30e-10	TCTGTTCGTC	CGAATTTCCATGTGTTGATATTTGTATCA	TCGTGACTTG

Motif KGGCTTCHCG

Start	P-value		Site
448	1.86e-06	TTGCAGTATT	TGGCTTCTCG	CCGAGAGAGT
353	2.85e-06	GTTCGACGAC	TGGCTTCCCG	ACCCTTCGCG
606	4.68e-06	TCTCGCTGAC	GGGCTTCACG	AGCGAGGGCC

Motif CGARKGWAWDCWCAG

Start	P-value		Site
143	9.11e-09	CACCAAGTAA	CGAGTGAAAGCACAG	GAAAACTCAC
51	1.66e-08	GACCTCGTAC	CGAGTGTATACACAG	ATAAGACGAA
391	6.43e-08	ACTGGTCACA	CGAAGGTAATCTCAG	GGCCTTCCTC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010148	100.0	711	0	0	1	711	1	711	0.0	1314