DoriC

RefSeq

NC_012029.1

DoriC accession number

aORI10010145

OriC length

574 nt

OriC AT content

0.4373

The location of oriC region

1076676..1077249 nt

Browse in NCBI

OriC map

OriC sequences

GACCGCGACTAAGGCTGTTGAGATCGCCGAAGTCATCGAGAAACCCGATGATCTGCGAGCAACCTCGCGACAATCGGACCCTACAGGCTTACGCTTGGGATCTTCCACGCGTCCCACCTCGTTCAGCCCTCTGATCGTCGTTCACCCCTCTGATCGCCGTTCACCCCTCTGATCGCGACGAGTGTGAACTCCCCGATGCGGCCGGCCCTCTCATCCAATCCGATCGCACCGAGGAACGACTGGACGAACTAGCGGGTGAGACCGACGAAGCCGTGGTCGACGATTGATTGGTTGATCGCTGAACCGAGACGCACCCCTCATTTCGTCTGTTGTCCGCGCTGGTAACCAACGGTCAAAGCACGTCGGGCTCACACCCCTCGTTTCGTCTGTTCTCTCAGCAGACCGATGGGGACGCCACGATGAGCTATCGGCCACACCCCTCGTTTCGTCTGTTCTGTGCCACACATTCCGAGTACCGATCTCTGATCGGCCGCAGCGACAAAACAAGCGAAACAAAGTAAACAGACGAACGCCACTTTTAAGTTAGTAAATAGTGTTACTCAGAATATCAACG

ORB AT-rich region

The information of repeat sequences

Motif CACCCCTCDTTTCGTCTGTT

Start	P-value		Site
435	1.29e-12	CTATCGGCCA	CACCCCTCGTTTCGTCTGTT	CTGTGCCACA
372	1.29e-12	GTCGGGCTCA	CACCCCTCGTTTCGTCTGTT	CTCTCAGCAG
312	3.63e-12	AACCGAGACG	CACCCCTCATTTCGTCTGTT	GTCCGCGCTG
124	3.30e-10	CCACCTCGTT	CAGCCCTCTGATCGTCGTTC	ACCCCTCTGA

Motif TCTGATCG

Start	P-value		Site
482	1.25e-05	AGTACCGATC	TCTGATCG	GCCGCAGCGA
168	1.25e-05	CGTTCACCCC	TCTGATCG	CGACGAGTGT
149	1.25e-05	CGTTCACCCC	TCTGATCG	CCGTTCACCC
219	5.47e-05	TCTCATCCAA	TCCGATCG	CACCGAGGAA
19	6.50e-05	CTAAGGCTGT	TGAGATCG	CCGAAGTCAT

Motif ACCGASRAA

Start	P-value		Site
261	5.19e-06	AGCGGGTGAG	ACCGACGAA	GCCGTGGTCG
228	9.11e-06	ATCCGATCGC	ACCGAGGAA	CGACTGGACG
522	3.74e-05	AACAAAGTAA	ACAGACGAA	CGCCACTTTT
495	4.63e-05	GATCGGCCGC	AGCGACAAA	ACAAGCGAAA
35	4.63e-05	CGCCGAAGTC	ATCGAGAAA	CCCGATGATC

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010145	100.0	574	0	0	1	574	1	574	0.0	1061