DoriC

RefSeq

NC_012028.1

DoriC accession number

aORI10010143

OriC length

366 nt

OriC AT content

0.5273

The location of oriC region

259259..259624 nt

Browse in NCBI

OriC map

OriC sequences

CGATGTTTATCCGGCAGTTCTACCCAATTTATCTCCTATATTCGGATGATCAGTGCCGTCTCTGTTGGGACCGACACCGAAGTATTTCCTATAAGGGACTCCCCGTCATCGATGTGTAACGCGAGCTACTTCGCCTTCTTGCTAATCTGATGGTTCGATATTCAGTACAGTCAATTCTACCCACTCCATCGACGTGTAAGCTGTCTGTCTGACACCCGGAATCGAAGTGTAACTTGTGGGTTCCACTCCTCGTCATCGATGTAAAAACTGGTTTGGTCTTCCAGTCTTCCGACTGCCAGCTATCGATTTACACTTCGAACACGGGGGGAATATTGATAGAAATCTATTGTCCCCGACTCCGTCATT

ORB AT-rich region

The information of repeat sequences

Motif CCCGNCATCGAHGTRTAACCTG

Start	P-value		Site
102	1.91e-11	TAAGGGACTC	CCCGTCATCGATGTGTAACGCG	AGCTACTTCG
215	3.18e-11	CTGTCTGACA	CCCGGAATCGAAGTGTAACTTG	TGGGTTCCAC
249	1.65e-10	GGTTCCACTC	CTCGTCATCGATGTAAAAACTG	GTTTGGTCTT
182	5.03e-10	CAATTCTACC	CACTCCATCGACGTGTAAGCTG	TCTGTCTGAC
70	4.90e-09	CTCTGTTGGG	ACCGACACCGAAGTATTTCCTA	TAAGGGACTC

Motif GATRWTCAGTRCMGTC

Start	P-value		Site
45	8.33e-10	CCTATATTCG	GATGATCAGTGCCGTC	TCTGTTGGGA
157	2.32e-09	CTGATGGTTC	GATATTCAGTACAGTC	AATTCTACCC

Motif RRGGGA

Start	P-value		Site
324	8.64e-05	TTCGAACACG	GGGGGA	ATATTGATAG
93	3.69e-04	TATTTCCTAT	AAGGGA	CTCCCCGTCA

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010143	100.0	366	0	0	1	366	1	366	0.0	676