DoriC

RefSeq

NC_012028.1

DoriC accession number

aORI10010139

OriC length

1219 nt

OriC AT content

0.4873

The location of oriC region

1555..2773 nt

Browse in NCBI

OriC map

OriC sequences

GCGGAGCTCTATCAGTATAACACTTGCAGGGTGGTGTGTCGTCTAGAACACTTGCAGCTTGGTGTGGTGTTGAAAACACTTGCAGGGTGGTGTGGTCAAATACGCCGCGTACAATATTCTTTCACGTGGACTTGATCAAGTAGGAGTGATTCACTCCCATTCAATGCCTACGGAGACTGCGCTCTCTACGGGAACCGATTCGGTTCCTACAAAGCGCGTCTTGGAAACAGGAAGCCCCGTCCTCTGTGAGGCCGTAAGGTCGATCGGGGTGAGGTAGTTCACTTAGTGTAGGTTCAAGTTTTGTCTTATGAGTGATGGGCTTTCTATGTCTCTCGATTTGAGCTAGCAGGTCGATGCTTAGAGCTACACGTAAAACACCCCTCTATCGATGTGTAAACTTCCAGCTGAGCCTATCTATCGTCAGGACGCGATATATTCTCGTACAGACCATCTTCTCGGGCTTGTCAGAGATGGTCTCGTAGATCTGCTGGAGCGTCTCCTCAACGGTGAACAGGTTGTGCTTTCGAGGAACTCGTGGCTTTACTCAGTGAGACCGTAGAACTTCTAAGAGAGCCCTGTCGACGTATCCGACAGCGCCCGCTTTTTTTGGTGTTGTTTCCGGACTCTTCGAGTCGACCTCGAAACAGGCGAGTGGAGTCGGTTCGAAGCGTAGCCACTCATCCCTTTTTGTCGACTAACAGCACAGCGACTAAACGCAACTGCTCCATAATTGACCGCACCGATACTACTGAGCCAATATTAGTATTCGCTGGCTCTGCTGAAATCCTATTCTTCAGCTATATTCTCGCCTGAAACAGCCAGCTGATTAGGACTTCGAACACAACAAAGACAATCATTAATTGAAATTACAAGTAGCAGCGTGTTATTATATCATTTATCGAACGGCTATACATATACACCGGCACGTTCGCCGTAATTGGGGCTTCACTGGGAGGGCCAGCAACACGCTCGCTCATTGCCGGAGACCACAGCATCCCAATACTGCTTATGGCGATTGGCGGAGCTGGAATGATCAGTACCTCACAAAGCATCCTCGGCTAGCTGTTTCTGCGGCCTGAGTTCTGTGTCGAAGCGGTTGTACTGACGGTCTCGACGAGAGAATTACGGACGGATCGACGGAGAGCTGTCGCTGTCGGCGGCGGTCAGCCGCCGACGCGACAGCGTCGCCACTCACTCCGCTGGCTTGCTCGGTCGGTGG

ORB AT-rich region

The information of repeat sequences

Motif AACACTTGCAGSGTGGTGT

Start	P-value		Site
75	8.20e-12	TGGTGTTGAA	AACACTTGCAGGGTGGTGT	GGTCAAATAC
19	8.20e-12	CTATCAGTAT	AACACTTGCAGGGTGGTGT	GTCGTCTAGA
47	4.62e-11	TGTCGTCTAG	AACACTTGCAGCTTGGTGT	GGTGTTGAAA
869	9.12e-10	AATTGAAATT	ACAAGTAGCAGCGTGTTAT	TATATCATTT

Motif ACAGCRHAGCCACTCAHYVC

Start	P-value		Site
1179	1.30e-09	CGCCGACGCG	ACAGCGTCGCCACTCACTCC	GCTGGCTTGC
698	3.82e-09	TTGTCGACTA	ACAGCACAGCGACTAAACGC	AACTGCTCCA
665	4.21e-09	GAGTCGGTTC	GAAGCGTAGCCACTCATCCC	TTTTTGTCGA
841	3.20e-08	GACTTCGAAC	ACAACAAAGACAATCATTAA	TTGAAATTAC
984	4.36e-08	TCATTGCCGG	AGACCACAGCATCCCAATAC	TGCTTATGGC

Motif AAACABSCMGC

Start	P-value		Site
813	3.18e-07	TTCTCGCCTG	AAACAGCCAGC	TGATTAGGAC
373	4.32e-06	GCTACACGTA	AAACACCCCTC	TATCGATGTG
225	4.32e-06	CGCGTCTTGG	AAACAGGAAGC	CCCGTCCTCT
395	7.34e-06	ATCGATGTGT	AAACTTCCAGC	TGAGCCTATC
98	7.71e-06	TGGTGTGGTC	AAATACGCCGC	GTACAATATT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010139	100.0	1219	0	0	1	1219	1	1219	0.0	2252