DoriC

RefSeq

NC_012028.1

DoriC accession number

aORI10010138

OriC length

444 nt

OriC AT content

0.6036

The location of oriC region

525725..225 nt

Browse in NCBI

OriC map

OriC sequences

TTTGAATGATGATCAAATAGGGAGTCACACACCACCCTGCAAGTGTTCTCTAAATACGAAAGCGTCTATTTCACTCAGGTTGATATAAGCTCGCAGTATATAAAACGGATTCTTAAATAGTTCTTTACTAGACTTACTACACTCTAAAACCGATAGAAGGAAGCACGATTTTCAATTCAAGAATACCGGCAACAACAACAACAACAACAACATTTATAAAAACAGTAAGTAGTAACGATGTTTCTACCTGAAATTCTATCGACTCAGCCGTTCTAATGTATGTTTAGCAGGTTACTTACGTCCAGTTATTGGGAGTAACCCCTCACCTTCGGCTGGAAGAAAACACTTGCAGGGTGGTGTGTGAGGGGCTACTTCCGAGAACACTTGTAACACTTGCAGGGTGGTAGAAGCGTTTATAACGGTACAGTCTATCATAGTTAACAA

ORB AT-rich region

The information of repeat sequences

Motif CACTTGCAGGGTGGT

Start	P-value		Site
391	2.66e-10	ACACTTGTAA	CACTTGCAGGGTGGT	AGAAGCGTTT
344	2.66e-10	TGGAAGAAAA	CACTTGCAGGGTGGT	GTGTGAGGGG

Motif GGGAGTMACMCMYCACC

Start	P-value		Site
311	1.11e-10	TCCAGTTATT	GGGAGTAACCCCTCACC	TTCGGCTGGA
20	1.76e-10	TGATCAAATA	GGGAGTCACACACCACC	CTGCAAGTGT

Motif GGYTACTTMCG

Start	P-value		Site
367	8.23e-08	GTGTGTGAGG	GGCTACTTCCG	AGAACACTTG
290	5.06e-07	ATGTTTAGCA	GGTTACTTACG	TCCAGTTATT

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010138	100.0	444	0	0	1	444	1	444	0.0	821