DoriC

RefSeq

NC_011832.1

DoriC accession number

aORI10010058

OriC length

718 nt

OriC AT content

0.6309

The location of oriC region

2922641..441 nt

Browse in NCBI

OriC map

OriC sequences

CCTCTAACTCTCGTAACTGGAGGATATTAAATTTTTTTTCTTGATCTCTCTCCATGAGAAATAGTTAAAGTCCAATTAAGGGTTTCTTTTTACTCTTCATTCTGAAATCAGATAAACGCATCAAAAATTGGACGATTTTTCATGGAAAGGGACCCACCCCTTTATTTCCACTGGAAGTTTGTTCTCCTTCGATGACCCTTCTGGAAGTGAAGCATGATCACCTTCTATAACAATACAGATTGTTCCAGGTGATATGATGTGGTTATAAGGTTATTATTTATAGTATTAAATTCATAATTACTCAATGCTCGTATCTCATTTTTAGAGAAGAAGAGAATCTATCTCGTGTTCTCATGTTCCATAGGAAATAAAGGGGTGGGGGTACATTTTTTTGCTTCCAAGTGTTCTGATACCAAATTCAACAGATATTCCTGGGTGTTCTTCCAAATTAATCTAAAAATCCAGAGATCAGGAGATCATCTTCAGGGAAGATCGTGATCTCAATAATTCTCCAGTGGAAAAGAGGGGGTATATAAATTCCATAACTCTGATCAGATGAAACGCTCCACTATGATGGAAGTTTGAGATTCTCCACTGGAAATGAAGGGGTATCGATCGATTATCAGGTGATAAGCGATCATCTTAATAGAAACAGATAGCTAATGTACAGATTCCAGTGAACGAGATGCCTGAAGAAGAATGCGATCAGAACAGATCA

ORB AT-rich region

The information of repeat sequences

Motif TKYTCCABDGGAAATGADGGGGT

Start	P-value		Site
588	1.72e-13	AAGTTTGAGA	TTCTCCACTGGAAATGAAGGGGT	ATCGATCGAT
508	7.27e-13	ATCTCAATAA	TTCTCCAGTGGAAAAGAGGGGGT	ATATAAATTC
355	1.04e-11	CGTGTTCTCA	TGTTCCATAGGAAATAAAGGGGT	GGGGGTACAT
241	3.57e-11	CAATACAGAT	TGTTCCAGGTGATATGATGTGGT	TATAAGGTTA

Motif TGWTCWCYYTCBATRAS

Start	P-value		Site
180	3.92e-10	ACTGGAAGTT	TGTTCTCCTTCGATGAC	CCTTCTGGAA
42	3.43e-09	TTTTTTTTCT	TGATCTCTCTCCATGAG	AAATAGTTAA
215	3.86e-09	AAGTGAAGCA	TGATCACCTTCTATAAC	AATACAGATT

Motif ACAGAT

Start	P-value		Site
711	3.34e-04	TGCGATCAGA	ACAGAT	CA
667	3.34e-04	TAGCTAATGT	ACAGAT	TCCAGTGAAC
652	3.34e-04	CTTAATAGAA	ACAGAT	AGCTAATGTA
422	3.34e-04	ACCAAATTCA	ACAGAT	ATTCCTGGGT
235	3.34e-04	CTATAACAAT	ACAGAT	TGTTCCAGGT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010058	100.0	718	0	0	1	718	1	718	0.0	1327