DoriC

RefSeq

NC_010364.1

DoriC accession number

aORI10010135

OriC length

700 nt

OriC AT content

0.35

The location of oriC region

911958..912657 nt

Browse in NCBI

OriC map

OriC sequences

CTCTGCCATACTCCCTTGGTCCGCCGCTGGCCTCAAAACGGTTTCTCAATCCGGCCGCTGGTCGCGGTCCCCCACCCCAAGTCTCAAGTGTTAGTCGGCGAAACCCCGGGCCAGATTGAACAGGGCCTCTCGGTCGACAGTCCGTTCCCAGTAGCGGTCGGGACGCGACTGTGCGGCCGGCTCGCCGGCTGTGGGCGGCACGCGATCCGACTCGGCCGGGGTCAAGCGAGTGGCTCGGGCTGGGACGGGCGAGGAGCACGTCGTGTTGGCGGTGGTGCCGTAACTGCCCGCGAAGGACGTCGAGAAGCGGTGAGGCTGGGATTCGAACCCAGGAGGCGTGACGCCACCGGTTTTCAAGACCGGCGCAATAGGCCGCTCTGCCACCTCACCGTACACGACGCGATTGAACGGGGGGAGGGTTGAAACTGTCGTTGTCCGGCGAGCCCGGGGTCGGCTCTCCCACCCACCCCGTATTTCGAGTGTTTTGCGGTGCGGACACCCCACCCACCCCCTCCCCCACCCCGATCTGCAAATGTTCGACTGTGTGCTCCGGGGGCCACCCCCCAACGGTGGCAGGGATCGGTGACACCGTGTCATCGGTTTGCACTGCCGCGGTCCGGATCCCGACGAAACACCCGAAACAGCCGAAACACGAGAACCAAAGTGTTATGAAACGGTGGGTAGAAACTCTCGGCAAGCG

ORB AT-rich region

The information of repeat sequences

Motif YCMCCCACCCCRWDYYKCRARTGTTHKDCKGYG

Start	P-value		Site
68	1.38e-16	CTGGTCGCGG	TCCCCCACCCCAAGTCTCAAGTGTTAGTCGGCG	AAACCCCGGG
513	1.68e-16	ACCCACCCCC	TCCCCCACCCCGATCTGCAAATGTTCGACTGTG	TGCTCCGGGG
460	2.99e-16	GTCGGCTCTC	CCACCCACCCCGTATTTCGAGTGTTTTGCGGTG	CGGACACCCC

Motif THGAAACKGT

Start	P-value		Site
420	1.65e-07	GGGGGGAGGG	TTGAAACTGT	CGTTGTCCGG
669	2.84e-06	CCAAAGTGTT	ATGAAACGGT	GGGTAGAAAC
682	3.20e-06	AAACGGTGGG	TAGAAACTCT	CGGCAAGCG
33	6.25e-06	GCCGCTGGCC	TCAAAACGGT	TTCTCAATCC

Motif AGCGGTSRBGMCGBGAYT

Start	P-value		Site
306	1.53e-08	GACGTCGAGA	AGCGGTGAGGCTGGGATT	CGAACCCAGG
153	1.53e-08	CGTTCCCAGT	AGCGGTCGGGACGCGACT	GTGCGGCCGG
268	1.82e-07	ACGTCGTGTT	GGCGGTGGTGCCGTAACT	GCCCGCGAAG
388	1.95e-07	CTGCCACCTC	ACCGTACACGACGCGATT	GAACGGGGGG
579	2.24e-07	GGTGGCAGGG	ATCGGTGACACCGTGTCA	TCGGTTTGCA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010135	100.0	700	0	0	1	700	1	700	0.0	1293