DoriC

RefSeq

NC_009712.1

DoriC accession number

aORI10010049

OriC length

420 nt

OriC AT content

0.6881

The location of oriC region

2542869..345 nt

Browse in NCBI

OriC map

OriC sequences

TATTTCCAGTGGAGACATGAATGTTATCTCATTATGTTGATTCTGATTCATCTCTGATTTTAATTTAATTCGATTTTTTTCGAATTGTTTAAATACAATTAAACACATATTAGAGATGACTATTTTTATTACATATTGAAAATATCTTAAGGTATTTTCTTTCAGATTCCACAAGAAACAAAGGGGTCCCCCATGAAATCAGTTTCTCAGAAGAAACAGAATTGTTTTCCCGCAAATGTGCCTTATTTGGAGGATTATGAAAATTAAAAATAAAAAATGTTCGATTTTGATAATTATGTCTGATTTGGGAAATCTGCGGTTTAAAACATCCTTTCCACAGGAAGCAATGGGGTTTATAAAAGGAACAAAGTACGTACTTTTTTAATCTCTCCCCACTAAGACTCAGCTCCACGTGTCATT

ORB AT-rich region

The information of repeat sequences

Motif TYYCASARGAAACAWWRDKGTYHWC

Start	P-value		Site
167	8.80e-15	TTCTTTCAGA	TTCCACAAGAAACAAAGGGGTCCCC	CATGAAATCA
333	6.81e-11	AAAACATCCT	TTCCACAGGAAGCAATGGGGTTTAT	AAAAGGAACA
205	8.19e-10	GAAATCAGTT	TCTCAGAAGAAACAGAATTGTTTTC	CCGCAAATGT
4	2.76e-09	TAT	TTCCAGTGGAGACATGAATGTTATC	TCATTATGTT
388	6.76e-09	TTTTTTAATC	TCTCCCCACTAAGACTCAGCTCCAC	GTGTCATT

Motif SGSAAATSTGCS

Start	P-value		Site
307	1.69e-07	TGTCTGATTT	GGGAAATCTGCG	GTTTAAAACA
231	1.69e-07	ATTGTTTTCC	CGCAAATGTGCC	TTATTTGGAG

Motif ATSTYTGATTT

Start	P-value		Site
296	1.26e-06	TTTGATAATT	ATGTCTGATTT	GGGAAATCTG
50	2.53e-06	ATTCTGATTC	ATCTCTGATTT	TAATTTAATT
277	3.40e-06	AAAATAAAAA	ATGTTCGATTT	TGATAATTAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010049	100.0	420	0	0	1	420	1	420	0.0	776