DoriC

RefSeq

NC_009634.1

DoriC accession number

aORI10010046

OriC length

608 nt

OriC AT content

0.8421

The location of oriC region

1050354..1050961 nt

Browse in NCBI

OriC map

OriC sequences

AATAATTCCTTTTTAAAATATTTCATTTTATTTATTGGTTTTTTTATTTTTATCAGTTATGGTTAGGTATTATTTATATTAGTAGTTATATTCATGATTTTAAATTACTTATATCATTTTATTCAAAAATTATTTTTTAAAACAGGTACTAACTCGAATTTTTAAACATTAGTCTTATTTTAATTGATTATTTTTAAAAATTACCAATGATACTATATTAATTACATTATTAAAGTATGATACATATATTAATTATTTATATTTCTTTATATTCATAATATTTAAGACCTATTTCTTTATATTCATGATTTTTTCCAACTATTTTTACAAATAATTACATATTAAAGTATATTTTATTATCACTGTGATAGTTTATATATTTTATATTATTATATTAAATATAATTTTATCTAATTATAAACCATATACTCCATTATTTTATGATTATATTATTATATTCACAATATTTCTTTAAAAAAACAATATATTCATAAAATAGTATTTTGAAGATATTTATAGTTTCGGTTTTTCGAAAGATATAAAAAAGATGATTTTGAATATAATTTAGGACACTTTTCGGACACTTTTTATTTTGGAGGATATGGTTT

ORB AT-rich region

The information of repeat sequences

Motif GGASAM

Start	P-value		Site
579	7.30e-06	GACACTTTTC	GGACAC	TTTTTATTTT
568	7.30e-06	ATATAATTTA	GGACAC	TTTTCGGACA
595	2.12e-05	TTTTTATTTT	GGAGGA	TATGGTTT

Motif GKTTMGG

Start	P-value		Site
61	3.59e-06	TATCAGTTAT	GGTTAGG	TATTATTTAT
519	7.89e-06	GATATTTATA	GTTTCGG	TTTTTCGAAA

Motif TATATTCATRA

Start	P-value		Site
298	3.19e-06	CCTATTTCTT	TATATTCATGA	TTTTTTCCAA
87	3.19e-06	TATTAGTAGT	TATATTCATGA	TTTTAAATTA
454	5.36e-06	ATTATATTAT	TATATTCACAA	TATTTCTTTA
484	1.80e-05	AAAAAAACAA	TATATTCATAA	AATAGTATTT
268	1.80e-05	TATATTTCTT	TATATTCATAA	TATTTAAGAC

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010046	100.0	608	0	0	1	608	1	608	0.0	1123