DoriC

RefSeq

NC_009440.1

DoriC accession number

aORI10010042

OriC length

396 nt

OriC AT content

0.6667

The location of oriC region

432754..433149 nt

Browse in NCBI

OriC map

OriC sequences

GTTTTACTTTATTATTCTACTTTATAAATGTTTATGACTAGAGGATTCGACTTCGCGATTTTTCAGAGAATTGTTACAAGTTAGTTGAGGAACAACCAGAGAATAGTCCAGATTGGGGATAGTTTGCGTTGCATGGTATTAGTTAAGGAATTAATTGAATATCAAATCAAACTGACGTAATGTGATAAAGTGAAAACTAAATCATATATATGGACTTTGTTGCTCCAGCCCTTGTATTTCCCTTAACCTTCATGAATCTAGTATTTTCTAGTATTTTAGGAATGCGCTATACAAGTTCATATCTGTTTATTATCTCTCCGCAGGAATCGTTTGAATTACGATGTAACCGAAATTGTCTAAAAGGGGAAGGAATTTGGATTGAAACAAAGAGTCACA

ORB AT-rich region

The information of repeat sequences

Motif CTYCGC

Start	P-value		Site
316	2.72e-05	TTTATTATCT	CTCCGC	AGGAATCGTT
51	9.37e-05	GAGGATTCGA	CTTCGC	GATTTTTCAG

Motif AGGAAT

Start	P-value		Site
368	4.13e-04	TAAAAGGGGA	AGGAAT	TTGGATTGAA
322	4.13e-04	ATCTCTCCGC	AGGAAT	CGTTTGAATT
278	4.13e-04	CTAGTATTTT	AGGAAT	GCGCTATACA
146	4.13e-04	GTATTAGTTA	AGGAAT	TAATTGAATA
88	5.81e-04	AAGTTAGTTG	AGGAAC	AACCAGAGAA

Motif CAGAGAA

Start	P-value		Site
97	5.35e-05	GAGGAACAAC	CAGAGAA	TAGTCCAGAT
64	5.35e-05	CGCGATTTTT	CAGAGAA	TTGTTACAAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010042	100.0	396	0	0	1	396	1	396	0.0	732