DoriC

RefSeq

NC_008818.1

DoriC accession number

aORI10010036

OriC length

634 nt

OriC AT content

0.5221

The location of oriC region

1225192..1225825 nt

Browse in NCBI

OriC map

OriC sequences

CTACCACCCCTATGCTTCGTCTGGAGAATGGGTATTCTTGCTCCGGGAATACCTAGCCAGAGCTAAACATAGCCTTTCACCATCAAGTTTATACAAACAGGCAAAAATACTCGGTGATGCATGGTATCTATACTCGCTGGCTAAGTAATACTGAGATGAGGCTCTGGGGTAGTGAAGATAAAAGGGGGGATGAAGCTTAGGTGAGAACCTCCTCGCTTTGCCGGAGTAGTTGTGGTAGTCTATACTTGTATCCAGCCGCGGCATGCTCGTCATCTACTATAGCCCGAAGGCTCGTCTCCGGTTCCTTAGCTTGACCTCCCAGTAGAGCTGCCTTGCTGCTGGATTGCTTGCAGGTGCCTCCAATATCTTTCCATTTGCTAGCTTTAGTAGAAGCTTGTCTCCTTGTATCCATACATCCTCGATCATGTCAAGTGAAGGATACTTCGCCTTGCCTTGTTGGTCATCCAAAAGTAGGCTTTCAGTCATAGCGTTTTGGGCACCTGCCAGTATTATCTAGATAGGGTCTACCTATATTTTGGTGTTTCGGAGGGTAAAATACTTGGGTTGTGAGGAGGCCATTTTGTGCTGATGCTTGTGTGATGAGTGGAGACCTCGCCGAACCCACCATTAGCGA

ORB AT-rich region

The information of repeat sequences

Motif AKCCAAAMATASBCKDTCA

Start	P-value		Site
61	1.35e-09	ACCTAGCCAG	AGCTAAACATAGCCTTTCA	CCATCAAGTT
463	1.52e-09	CTTGTTGGTC	ATCCAAAAGTAGGCTTTCA	GTCATAGCGT
99	3.17e-09	TTATACAAAC	AGGCAAAAATACTCGGTGA	TGCATGGTAT
407	3.49e-09	GTCTCCTTGT	ATCCATACATCCTCGATCA	TGTCAAGTGA

Motif ACCYVCCAKTA

Start	P-value		Site
314	3.15e-07	CCTTAGCTTG	ACCTCCCAGTA	GAGCTGCCTT
499	4.88e-07	CGTTTTGGGC	ACCTGCCAGTA	TTATCTAGAT
620	1.73e-06	ACCTCGCCGA	ACCCACCATTA	GCGA

Motif GRAKACYTMGCC

Start	P-value		Site
606	1.20e-07	TGTGATGAGT	GGAGACCTCGCC	GAACCCACCA
437	2.19e-07	GTCAAGTGAA	GGATACTTCGCC	TTGCCTTGTT
47	3.27e-07	CTTGCTCCGG	GAATACCTAGCC	AGAGCTAAAC

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010036	100.0	634	0	0	1	634	1	634	0.0	1171