DoriC

RefSeq

NC_008818.1

DoriC accession number

aORI10010035

OriC length

529 nt

OriC AT content

0.5312

The location of oriC region

5011..5539 nt

Browse in NCBI

OriC map

OriC sequences

TGCTCCCCCCAGACTAGGCTAGTTCTTAGCTAGCCCCTCCTTAAAACTGGCGGGAGACTACTAGCCCCACTCTGGGCCCACTCCACAGGAAAGCTAGGGGTCGTATGACGAACTGTTTCACAATAAGAACGAAATATTCAGCACTAGCATGCACCAATGGTTGACTCTGGCACCCCTCAACTTCTAGTGCAGACAATACAGCATACAAGGATGAACTGGTAACTGCATAGCAATTGCAACGCTACTCTAGTTTATACAAACAGGCAAGTTTAAATAAGGGCCTATAAAGGATATGCGATGTAAATCCATTGTCCAATAATCTGATTCACAACTTGAATGCAAACTGCAATATGTATGTGAGTTCACAATTGTAACTCAGAGCTTCTGTCTACAGGCAATTGGGGGGTGCCAGGGTGTTTCCATGTGCTACAGCTGGCAGTGATCTTAGAGTCATTGCTGCCGTGATGGGTTTCAGTGTCTTGTGGCCCTATGGTGGGCTGGAGTGGAAGCTGAGGGGTTGTTTACCCTA

ORB AT-rich region

The information of repeat sequences

Motif CTVGCCCCAC

Start	P-value		Site
61	1.24e-06	CGGGAGACTA	CTAGCCCCAC	TCTGGGCCCA
30	4.06e-06	TAGTTCTTAG	CTAGCCCCTC	CTTAAAACTG
72	6.47e-06	TAGCCCCACT	CTGGGCCCAC	TCCACAGGAA
167	1.76e-05	ATGGTTGACT	CTGGCACCCC	TCAACTTCTA
3	3.60e-05	TG	CTCCCCCCAG	ACTAGGCTAG

Motif TCACAAYTDGAAYGC

Start	P-value		Site
326	3.10e-08	ATAATCTGAT	TCACAACTTGAATGC	AAACTGCAAT
363	1.45e-07	GTATGTGAGT	TCACAATTGTAACTC	AGAGCTTCTG
118	3.27e-07	ACGAACTGTT	TCACAATAAGAACGA	AATATTCAGC
228	6.67e-07	GGTAACTGCA	TAGCAATTGCAACGC	TACTCTAGTT
138	1.60e-06	AACGAAATAT	TCAGCACTAGCATGC	ACCAATGGTT

Motif TSBASWGGMARBYKRGGGGT

Start	P-value		Site
82	1.65e-10	CTGGGCCCAC	TCCACAGGAAAGCTAGGGGT	CGTATGACGA
388	2.25e-10	AGAGCTTCTG	TCTACAGGCAATTGGGGGGT	GCCAGGGTGT
499	1.01e-09	TATGGTGGGC	TGGAGTGGAAGCTGAGGGGT	TGTTTACCCT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010035	100.0	529	0	0	1	529	1	529	0.0	977