DoriC

RefSeq

NC_008212.1

DoriC accession number

aORI10010131

OriC length

544 nt

OriC AT content

0.5239

The location of oriC region

2258065..2258608 nt

Browse in NCBI

OriC map

OriC sequences

TCCAGAAGCGAAACAAAGCAAACGCAAGGATAATTGCTATAACAACCCCCCAGAGTGTGAATGGGATCCGTCAACGACACCCCTCGGTGTGAATGGGTGAATAGATAGCGAATTAAGATAACCACACCCACACCCCTCAGTGTGAATGGTATACCACCGCTCATACAAGATTCAATCTCTCCTGTTCAATGTTGATACGGTCACAACTGGTGACCTTACTTCACTTCGCTCAGCGACCGGCTGCGGCGCAAGCGCCTTGCCTTGTAGAGATATTTTACTTGATTAGTTGTTTATGATAATGTATAATAAAACTACCTACTGGTGTGGTAGCGGTGGCGTTGCCAGTGCAGTTGAGCACACTGGACAGACAACACAGCAACAAATACCGCCCGATGGTACGGACATCCTTGGGTATAGACAGTCAAAAGCATGTTCGAGACAGTACTGCTGTGTGTTCTCTCTTCGATTAAACCGGTGGACGAGTGTTGAGTTAGCATTATTGTGTCCTATGGTGGACCATTCACACCGAGGGGTGTGGGAGGTA

ORB AT-rich region

The information of repeat sequences

Motif CAHCVACACCCCDSRGTGTGAATGG

Start	P-value		Site
125	6.96e-15	AAGATAACCA	CACCCACACCCCTCAGTGTGAATGG	TATACCACCG
72	9.85e-15	TGGGATCCGT	CAACGACACCCCTCGGTGTGAATGG	GTGAATAGAT
40	3.06e-12	ATAATTGCTA	TAACAACCCCCCAGAGTGTGAATGG	GATCCGTCAA
518	2.09e-11	TATGGTGGAC	CATTCACACCGAGGGGTGTGGGAGG	TA

Motif CGGYKGCGKYGCMAGYGC

Start	P-value		Site
331	3.00e-10	GGTGTGGTAG	CGGTGGCGTTGCCAGTGC	AGTTGAGCAC
238	3.00e-10	GCTCAGCGAC	CGGCTGCGGCGCAAGCGC	CTTGCCTTGT

Motif ACTGGTG

Start	P-value		Site
318	5.79e-05	AAAACTACCT	ACTGGTG	TGGTAGCGGT
206	5.79e-05	TACGGTCACA	ACTGGTG	ACCTTACTTC
471	1.67e-04	CTTCGATTAA	ACCGGTG	GACGAGTGTT
444	1.67e-04	TCGAGACAGT	ACTGCTG	TGTGTTCTCT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010131	100.0	544	0	0	1	544	1	544	0.0	1005