DoriC

RefSeq

NC_007796.1

DoriC accession number

aORI10010028

OriC length

385 nt

OriC AT content

0.6286

The location of oriC region

2743088..2743472 nt

Browse in NCBI

OriC map

OriC sequences

GTAAAAAAGTTGATAGATTTGGTATTATAGTATTCGACTGGAAGGGTTCCATCAGCAGGATCCCCCACCCCTTTGTTTCCACTGGAAAGATGGATCGTCTTTCACCCACAACATCTTTCGCACCTGCTTCCTTCATATACAATCTTTCATTTTTCTTAATTTTTTAAATTTTTTATTATCTTATAATAAAATCGGTATCTTTTTATGTACTCGAGCTGACCTATACCACAGAAAGTCTATCCTATTTTTTAAAAAACTACATGGCATGAGTCAAAGTAAGTGCTCCAGTGGAAATGAAGGGGTGGGGGTATAATTCTTCAGACACCTGAATACTCCACTAGTATTATTGGAGTACCGATCGTACAATAGAGGGATTACCTGTTCC

ORB AT-rich region

The information of repeat sequences

Motif CCACTGGAA

Start	P-value		Site
79	1.95e-06	CCCTTTGTTT	CCACTGGAA	AGATGGATCG
285	6.93e-06	AGTAAGTGCT	CCAGTGGAA	ATGAAGGGGT
35	6.93e-06	TTATAGTATT	CGACTGGAA	GGGTTCCATC
226	3.14e-05	CTGACCTATA	CCACAGAAA	GTCTATCCTA
335	5.02e-05	CCTGAATACT	CCACTAGTA	TTATTGGAGT

Motif GGGGTR

Start	P-value		Site
299	5.10e-05	TGGAAATGAA	GGGGTG	GGGGTATAAT
305	1.36e-04	TGAAGGGGTG	GGGGTA	TAATTCTTCA

Motif AGMDGGAT

Start	P-value		Site
368	7.09e-06	ATCGTACAAT	AGAGGGAT	TACCTGTTCC
88	3.79e-05	TCCACTGGAA	AGATGGAT	CGTCTTTCAC
54	4.62e-05	GGGTTCCATC	AGCAGGAT	CCCCCACCCC

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010028	100.0	385	0	0	1	385	1	385	0.0	712