DoriC

RefSeq

NC_007426.1

DoriC accession number

aORI10010026

OriC length

1222 nt

OriC AT content

0.4501

The location of oriC region

302012..303233 nt

Browse in NCBI

OriC map

OriC sequences

ATCATCCTCCCACGCCCCCGATTTCGAGTCGAAATCGGAGTCGCTCTGCAGATACTACCATCCTGAACTCACTTAAACATATGTCAGACATCAGCCTACCGGTTCCGTAGCCGGTCGGCTTTGGGTCGAGCTGGGCCGGACCAGATGGGGCGGAGCCAAGCATGGGACCAAGGAGGGGCGGGCCACTCCGTTCGTCTTCGTCTGTCGGCAGGCCCACCTGTCTTTGTCTGCCGACAGGCCTCTGGGACAGCAGGACCGTATCCCTGCCGCACCCCCCCACCCCTTCGTTTCAACTGGAGCGGAGAAATGGAGGGGGAGGGGGAGCGCTGGAGTGGGTGAACTCATAGTAGAATAAATAGCGTTTAACGTAGCTACTACTGTACTCTCTGGAATAACCGAGGAAGAGTGTATCGGTAAGCTAGTTTAGATTGGAGACCTAGCCGGGATAGACTAGATATGCTGCTGTATCTAGTACTCACTAGTAATTTTCTACTACTACTAGCAACATAGCGAAACACAGCGAAACACAGCGATTACTAGCCTATAACAACCATAGAAATATAAACAGAATCGTATTTCTTTGTCGTACGGATTTGGTTACTTCCTACAGGTAATAAAGGTTTCTCAACTAGAACGCCTCTCGTCTACCCCTCCCCACCCCTTTCAACGGCTCCAGTCGAAACGAAGGGGTGTGGGGGTAACCACCCTTGTTTCGTCTGCATCAACTGGAGATGTGACTTTCCCGACTTTCCTGGCCCGCTGGATTCTCTCGACCCCACTCTCTCGTTCCCCGTGTTTCACGTCGCCGCCCCCTCGGCACTGGCCCAGCGTCTCGGCGTCCGGTCTCTCAGCATCCGACTTGTTTCTCGGCGTCCAATTCCGTCGGCGTCCAATTCCAGTGCCGATATCCGAGTTCAGTGTCCGTCAGAGTTCAGTGTCCGTCAGATATTATGGCGGAGCTCCCGCCCGGTGGGGGGCTTCGGTCGGCACGTCGGCGTCCGGGTGCTCGAAGTCGGGGCTCCCAATCTCTTTGCCGACCTCATCAAAAAACTTAATACCGAACTCGACCATCGGTTCGACTGCATCAAGTGGACATCCGTTTGCACGCCCTCCACCGAATCAGGGCCTCTACCCCCTGTATTCTTTCCATTCGCTCGATGCGGGGTGGTTTTCCAATTGAAACGGTGGGGTACAGCGGAGACACGCCGCAGGGGAACACAGA

ORB AT-rich region

The information of repeat sequences

Motif GRAANMSASYATHKDTTMGNCTGYATCAABTRGASA

Start	P-value		Site
1060	7.95e-16	ACTTAATACC	GAACTCGACCATCGGTTCGACTGCATCAAGTGGACA	TCCGTTTGCA
697	1.84e-14	GGGGTGTGGG	GGTAACCACCCTTGTTTCGTCTGCATCAACTGGAGA	TGTGACTTTC
400	3.27e-12	GAATAACCGA	GGAAGAGTGTATCGGTAAGCTAGTTTAGATTGGAGA	CCTAGCCGGG
443	3.71e-12	AGACCTAGCC	GGGATAGACTAGATATGCTGCTGTATCTAGTACTCA	CTAGTAATTT
522	6.02e-12	GAAACACAGC	GAAACACAGCGATTACTAGCCTATAACAACCATAGA	AATATAAACA

Motif TCGGCGTCCRRTTBC

Start	P-value		Site
883	6.12e-09	TCCAATTCCG	TCGGCGTCCAATTCC	AGTGCCGATA
867	6.12e-09	GACTTGTTTC	TCGGCGTCCAATTCC	GTCGGCGTCC
833	7.03e-08	GCCCAGCGTC	TCGGCGTCCGGTCTC	TCAGCATCCG
992	1.91e-07	GGTCGGCACG	TCGGCGTCCGGGTGC	TCGAAGTCGG
925	5.40e-07	TCAGTGTCCG	TCAGAGTTCAGTGTC	CGTCAGATAT

Motif AAAYGGAGSGG

Start	P-value		Site
305	1.37e-07	TGGAGCGGAG	AAATGGAGGGG	GAGGGGGAGC
1180	2.12e-06	TTTCCAATTG	AAACGGTGGGG	TACAGCGGAG
680	2.47e-06	GCTCCAGTCG	AAACGAAGGGG	TGTGGGGGTA
292	3.07e-06	CCTTCGTTTC	AACTGGAGCGG	AGAAATGGAG
143	7.45e-06	GGGCCGGACC	AGATGGGGCGG	AGCCAAGCAT

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010026	100.0	1222	0	0	1	1222	1	1222	0.0	2257