DoriC

RefSeq

NC_006397.1

DoriC accession number

aORI10010128

OriC length

1058 nt

OriC AT content

0.5265

The location of oriC region

8065..9122 nt

Browse in NCBI

OriC map

OriC sequences

ATTATGCGTGAATGAGTGAGGCTACCACAATAGTTGTTTCGACCACCGTTTCCGCTATTTCCAGTATAACCAGGACTGGGTGACCCTTCCGATATATGGGGAGGACCCCACTGTTTCCACTATATCACCTGCGCTCTATCGCGGTGCGGTTGAAGACCAGTAGAATGGAATTAGGTATATACGAGATAACTGCCGCTTGGCGCTATGTGGAGCGATAGTACCCCACTATTTCCAGTATATAGCGTGTCGTGGGGGGACTAGACACACCCCACCGTTTCCAGTAAATCGGAGTCACTGTATCATGAGTTGTGACAGATGGGTCAGACCACTGGGTTCCAGTATTTCCAGTAAATACCTTTTTATAAGAGTTAGAGACCCCACCGTTTCCAGTATATCGGTGAAACAAGTGTAATCAGGAGACTGAAGTAGGATGGAATGGTGTAGATTATTGGTACACCCTCCCCCCACTATTTCCAGTAAAGAACAACGAAGTAGCGACGACTACAGAAAATGAACTTTGATCTAGGGAAAAGTTTATAATAATAGCATTATAGCTAGACCGTAGTAGAGCTAGAGCGGTGTTGTTGTAGGGACTAGTTCTAGTGAAAGAAATGAGGTGCGGAGCCTAACTTACCTGTCCTACTAGCTTTAGTGGAAATAGTGGGGGGAGGGTGGCCATTCTTACTTCTTCTATCCTAATGTGTAATTCTAATAGTAGAAATAGTGGGGTCTGACGGGTGTCAGACAACGGGAGTTGGAACCCGAAACTTCGCGGAATGGCATACGGACTTCTTGGAATACTTGGGTTGCTGGTGTATCTGGTACAAAAGGAGCGTCAAAAGGCTGGCCCGACCTGACTAATATATCTGTCCGCTCGAGCTCCTCACTGATGTCCCGGATAGGGCAAATCGGTACGTTCGAAGGTCTACCTTGCAGTTAGTTCACTCGCTTTCACAGGTGAAGAAACTATATCCAACGACTGGTCTCACAGGCATGGGACCCATTTTTTAGCCCCAGTCTGGTGAGGGCCGTTCCAGTGAGAGCGTCCTGACCGTACC

ORB AT-rich region

The information of repeat sequences

Motif ACCCCACYRTTTCCAGTAWATMRS

Start	P-value		Site
375	2.92e-14	AGAGTTAGAG	ACCCCACCGTTTCCAGTATATCGG	TGAAACAAGT
220	4.37e-14	GAGCGATAGT	ACCCCACTATTTCCAGTATATAGC	GTGTCGTGGG
266	6.55e-14	GACTAGACAC	ACCCCACCGTTTCCAGTAAATCGG	AGTCACTGTA
105	1.24e-13	TATGGGGAGG	ACCCCACTGTTTCCACTATATCAC	CTGCGCTCTA
462	8.03e-13	GTACACCCTC	CCCCCACTATTTCCAGTAAAGAAC	AACGAAGTAG

Motif TAGTRGAANWAGTGGGGTGHKGNKG

Start	P-value		Site
650	2.77e-12	CTACTAGCTT	TAGTGGAAATAGTGGGGGGAGGGTG	GCCATTCTTA
713	6.47e-11	GTAATTCTAA	TAGTAGAAATAGTGGGGTCTGACGG	GTGTCAGACA
563	5.32e-10	AGCTAGACCG	TAGTAGAGCTAGAGCGGTGTTGTTG	TAGGGACTAG
601	1.69e-09	GGACTAGTTC	TAGTGAAAGAAATGAGGTGCGGAGC	CTAACTTACC
791	2.49e-09	CATACGGACT	TCTTGGAATACTTGGGTTGCTGGTG	TATCTGGTAC

Motif TTCCAGT

Start	P-value		Site
1032	5.78e-05	GTGAGGGCCG	TTCCAGT	GAGAGCGTCC
343	5.78e-05	GTTCCAGTAT	TTCCAGT	AAATACCTTT
334	5.78e-05	GACCACTGGG	TTCCAGT	ATTTCCAGTA
59	5.78e-05	TTTCCGCTAT	TTCCAGT	ATAACCAGGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010128	100.0	1058	0	0	1	1058	1	1058	0.0	1954