DoriC

RefSeq

NC_006396.1

DoriC accession number

aORI10010126

OriC length

339 nt

OriC AT content

0.4307

The location of oriC region

1402626..1402964 nt

Browse in NCBI

OriC map

OriC sequences

CCTGGCGGATTCGGTCGAAGTCTGTTCGAGTAGCCCCGAATCATCCTGTTTGAACACTCGACACGGTTGGGTGTCGGAGGATATGGTTCCACCCCATCTTGGGATGAACACTCGACACGGTGGGGTGGGGGAGGATGTGGTTCCACCCTGCATTGGAAAGAACACTTGGCACGGTGGGGTGGGGGTGATAATGAACGTAAGAGTGGCGCGGTCAATATTCAACCGGACAACGCCGCAGAACTGCGAACAATCTTAGAGCATCGTGCGAATCAAGCCTTCGTCGACGAAGCGTGTGACACATCAGTGATCGCGAAGGCAGCGGCGCTCGCCGCACAGGAC

ORB AT-rich region

The information of repeat sequences

Motif YYKGDWWGAACACTYGRCACGGTKGGGTGKSGGWGRWWRTGRWYSYA

Start	P-value		Site
99	1.39e-25	CCACCCCATC	TTGGGATGAACACTCGACACGGTGGGGTGGGGGAGGATGTGGTTCCA	CCCTGCATTG
45	1.01e-23	CCCGAATCAT	CCTGTTTGAACACTCGACACGGTTGGGTGTCGGAGGATATGGTTCCA	CCCCATCTTG
153	5.34e-22	CCACCCTGCA	TTGGAAAGAACACTTGGCACGGTGGGGTGGGGGTGATAATGAACGTA	AGAGTGGCGC

Motif CAATMTT

Start	P-value		Site
213	2.41e-05	GTGGCGCGGT	CAATATT	CAACCGGACA
248	4.94e-05	GAACTGCGAA	CAATCTT	AGAGCATCGT

Motif CGAATCA

Start	P-value		Site
266	4.87e-05	GAGCATCGTG	CGAATCA	AGCCTTCGTC
37	4.87e-05	CGAGTAGCCC	CGAATCA	TCCTGTTTGA

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010126	100.0	339	0	0	1	339	1	339	0.0	627