RefSeq NC_018936.1
Accession number NC_018936.1
DoriC accession number ORI96010337
OriC length 154 nt
OriC AT content 0.707792
The location of oriC region 1558..1711 nt
Browse in NCBI
OriC map
OriC sequences
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaaCATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnan
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
dnaACATGTGGAAAAGAATATCTTTTATGAAATAGTTATCCACAAGTTGTGAACATCCATTTAGTCTTGGATTCTCTCGTTTATTTAGAGTTATCCACTATATACACAAGACCTACTACTACTACTTATTATTATACTTATTAAATAAAGGAGTTCTCdnaN
5'-DnaA box-3'      3'-DnaA box-5'     Spacer     DnaA-trio            ATP-DnaA box
AT-rich region     GATC   CtrA binding motif     Fis binding site     IHF binding site
The information of repeat sequences

Motif AGTTATSMAC

StartP-valueSite
851.63e-06GTTTATTTAGAGTTATCCACTATATACACA
301.63e-06TTTATGAAATAGTTATCCACAAGTTGTGAA
416.61e-06GTTATCCACAAGTTGTGAACATCCATTTAG

Motif GRRTTCTC

StartP-valueSite
1471.92e-05TTAAATAAAGGAGTTCTC
651.92e-05ATTTAGTCTTGGATTCTCTCGTTTATTT

Motif SAMAAGA

StartP-valueSite
1017.58e-05CCACTATATACACAAGACCTACTACTA
71.38e-04CATGTGGAAAAGAATATCTTTTA
Distribution of genes on leading or lagging strand
Distribution of nucleotide on leading or lagging strand
The result of BLAST Download

subject_id identity aln_length mismatches gaps q_start q_end s_start s_end e_value bit_score
ORI96010337 100.0 154 0 0 1 154 1 154 0.0 285
ORI10010150 100.0 154 0 0 1 154 1 154 0.0 285
ORI10010014 100.0 154 0 0 1 154 1 154 0.0 285
ORI96010171 99.351 154 1 0 1 154 1 154 0.0 279
ORI92710450 99.351 154 1 0 1 154 1 154 0.0 279
ORI90010283 99.351 154 1 0 1 154 1 154 0.0 279
ORI20010198 99.351 154 1 0 1 154 1 154 0.0 279
ORI20010196 99.351 154 1 0 1 154 1 154 0.0 279
ORI20010194 99.351 154 1 0 1 154 1 154 0.0 279
ORI10010148 99.351 154 1 0 1 154 1 154 0.0 279
ORI10010113 99.351 154 1 0 1 154 1 154 0.0 279
ORI10010069 99.351 154 1 0 1 154 1 154 0.0 279
ORI20010200 98.052 154 3 0 1 154 1 154 0.0 268
ORI10010057 97.403 154 1 1 1 154 1 151 0.0 259