DoriC

RefSeq

NC_018829.1

Accession number

NC_018829.1

DoriC accession number

ORI96000441

OriC length

1791 nt

OriC AT content

0.431044

The location of oriC region

5090027..5091817 nt

Browse in NCBI

OriC map

OriC sequences

-ATCGGGAAATCCCGTTTTTCCCGCATACCAGGCCCAAGTGCCTGGTTACAACGCCCCAGGAACATAGCTTCTGGGGCGTTGTTGCTTTTGCCATCGCCGCACGGCATACAGTTAGTGCTTACTAACATCACTGCGGGCTTGGATAACTTTGTGGATAAGCCTCCGCCCGGTACCTGGATCGGACAGGTTTGCGCGCGCCGACGCCGGGCATGGTGCTGGAGTTTTACACAGCGGATGACATCGTTATTTCGCGCCACGGGTGGGACGATGGTGCGAGTCACCCGGGGCAGCTTGTTTCGTTGATCTACGCTTGCCAGGGAAAATCTCCTGTAAATCCACGGTGTTACGCGATCAGATATGCATGCTGGGGTTTCCGGCGCAGATCCGGACGTCACGGTTTGGCGATCTCGGGCCCACCTCGATTACGGGTCGGGCCCGATTTGTTCACAAAGATATCCCCAATTTTCTTGCCCGTATCGAGACATATTCCAGAAGGATTCCTGATCGAAAAATCTGTGGATACTTCTGGGGATTGATCCCCAATTCAGCACGGTTGTGTACCGGCGCCATGGTTGTACTTCGCCAGTGCCGGCGTCGACGCCAGTCTCGATTCGGCCGCCAACCAACACGGGCGGATTCGACGGAGGGCATTGATGCCGCAACGGCGCGCGGATCCCGATACCCCGCCGGGCGATCGGGTTGTCCACAGGGGGCGGTGGATAAGATGGTGATGCAGGCCGCACAAATTTCCGCGCCCATGTATGAATGTTGCCTTGGTGTTGCCGGTCTCAGGCGGATCCTAGCCGAAAGTATTAAGCCGTTGGATGGTAGCGTTTTCCCTGCGTGATCGATGCGGCTCGATGGGCCTGAACGAGACATCGGTCTTATATTTCTGGTCCCCGGTGTTGGCAGTATTGAGTCGCGATGTTTCACGTGAAACGAAAATTGCCATTCGATGCCATGGCCCGTGGCCACCTGCTTTGATTACATGCTTCGTGGTGGGCATGCCGCTTGCTCGTATATCGGATTTGCCGGGCCACTCTCTCAACGAGTCCAGGACATTCCGCAAATCGGAGAAATCCTCGAGCCCGGCAATCGGTATGCGGCGTGTTGACGACGCCCGCGAGATGCTCCTGGACGAGCCATCCCGTTGGCCATGGGTTTCGATATCTGGTCCCGTGCGTGGGGGCCCGCGCAGCCCGGACATTCTGCCGGCACACGAAACGGGATGCGGATCGAGCCTGGAGATCTAATGTCGAGCGTAGCCGGTCGTGCGCGCGTGGCGTAGAAGGGACAGGCGTTGGCGAACGCAGTGTACGGAGGAGTGCGCTAGTGGCCTGATCGGGATTATCCAAATCGCGGTAGCCGGGAAAGCCGGCTTGCTTCTGGTCATTCCGACATGGTCGTTTGACGAAAAATTGCGCTTGTTTTGGCCTAGGGGTAGGGTAGGGGTAAAAACATCGTTGTTTTTGGTTGGCCGGCACTGCGTGGCAGACAGCTCATGCTGCCGGTGTTTCACGTGAAACATCGCGCTGACGGGTTGAGTGAATCGGCCTCAATGCCGAACCAAGGAGTGTTGTTTCACGTGAAACACGTAATCGCACTATTGAGGGTCGGAACAGGCGCTGCATGTTTCACGTGAAACACTGTTAGGCCTGGCGTTTTGGGCAGAGGCCGTGGCGCATAAGCCGCATAGATCGCACGGATTACAGGGCTTACGATGTTTCACGTGAAACGCCCAACGAGGTGCCACTATAATGGCCACGGAACGCTCTTTCATCTCTCCCCATCgidA

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TGTTTCACGTGAAACR

Start	P-value		Site
1631	1.11e-10	AGGCGCTGCA	TGTTTCACGTGAAACA	CTGTTAGGCC
1578	1.11e-10	CAAGGAGTGT	TGTTTCACGTGAAACA	CGTAATCGCA
1512	1.11e-10	ATGCTGCCGG	TGTTTCACGTGAAACA	TCGCGCTGAC
1722	2.83e-10	GGGCTTACGA	TGTTTCACGTGAAACG	CCCAACGAGG
926	2.83e-10	TGAGTCGCGA	TGTTTCACGTGAAACG	AAAATTGCCA

Motif CCTKRWCGARAMAT

Start	P-value		Site
866	3.65e-09	GCTCGATGGG	CCTGAACGAGACAT	CGGTCTTATA
500	2.23e-08	CAGAAGGATT	CCTGATCGAAAAAT	CTGTGGATAC
472	1.96e-07	ATTTTCTTGC	CCGTATCGAGACAT	ATTCCAGAAG
1133	2.20e-07	GCGAGATGCT	CCTGGACGAGCCAT	CCCGTTGGCC
1406	5.93e-07	CGACATGGTC	GTTTGACGAAAAAT	TGCGCTTGTT

Motif GWTTCNGCCGCAAWBCMGVAC

Start	P-value		Site
609	4.46e-10	CGCCAGTCTC	GATTCGGCCGCCAACCAACAC	GGGCGGATTC
531	2.48e-09	TACTTCTGGG	GATTGATCCCCAATTCAGCAC	GGTTGTGTAC
1547	6.73e-09	CGGGTTGAGT	GAATCGGCCTCAATGCCGAAC	CAAGGAGTGT
370	9.24e-09	GCATGCTGGG	GTTTCCGGCGCAGATCCGGAC	GTCACGGTTT
14	2.53e-08	GGGAAATCCC	GTTTTTCCCGCATACCAGGCC	CAAGTGCCTG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	bit_score
ORI96000441	100.0	1791	0	0	1	1791	1	1791	3308
ORI10020006	94.81	1792	91	2	1	1791	1	1791	2793
ORI10020007	94.587	1792	95	2	1	1791	1	1791	2771
ORI96000440	94.475	1792	97	2	1	1791	1	1791	2760
ORI96000442	94.252	1792	99	4	1	1791	1789	1	2736
ORI96000380	94.572	1529	80	3	1	1528	1	1527	2361
ORI96000380	95.833	216	9	0	1576	1791	1509	1724	350
ORI10030012	94.572	1529	80	3	1	1528	1	1527	2361
ORI10030012	95.833	216	9	0	1576	1791	1509	1724	350
ORI96000433	94.506	1529	81	3	1	1528	1	1527	2355
ORI96000433	95.833	216	9	0	1576	1791	1509	1724	350