DoriC

RefSeq

NC_008553.1

DoriC accession number

aORI10010033

OriC length

412 nt

OriC AT content

0.5218

The location of oriC region

1553449..1553860 nt

Browse in NCBI

OriC map

OriC sequences

TGCATCCTTGGCATGGATGGTATTAAGAGTTATGGTGATCTCCCCTTTATTTCCAGTGGAAGGGGACCAACCCCTTTATTTCCAGTGGAGATTGCCATACACACCGGCAGAGAATCGTGAGCCCGTATTTGCTCAGGCTCATGAGGCCTTAGAGTGATGAACTCTGTACAACCACCACGTAGCTGGAGATCCTGTTTGAAATCGTTCAGGCTCATGAGGCCTTAGAGTGATGAACTCTGTACAACCACCACGTAGCTGGAGATCCTGTTTGAAATCGTTCAGGCTCATGAGGCCTTAGAGTGATGAGCCATGTACAACCAGCATTAATCGCCTCTACCCATATGTAAGATTGCTGATTTGCCAAATCACAGGGGGAATGCCACGACCAGTTATTCAAGCCAGCAATTCTGGA

ORB AT-rich region

The information of repeat sequences

Motif TYGYTCAGGCTCATGAGGCCTTAGAGTGATGARCYMTGTACAACCASCA

Start	P-value		Site
202	3.11e-30	CTGTTTGAAA	TCGTTCAGGCTCATGAGGCCTTAGAGTGATGAACTCTGTACAACCACCA	CGTAGCTGGA
129	5.03e-29	GAGCCCGTAT	TTGCTCAGGCTCATGAGGCCTTAGAGTGATGAACTCTGTACAACCACCA	CGTAGCTGGA
275	1.55e-28	CTGTTTGAAA	TCGTTCAGGCTCATGAGGCCTTAGAGTGATGAGCCATGTACAACCAGCA	TTAATCGCCT

Motif CTKKAKWTCCWGT

Start	P-value		Site
256	5.70e-08	CACCACGTAG	CTGGAGATCCTGT	TTGAAATCGT
183	5.70e-08	CACCACGTAG	CTGGAGATCCTGT	TTGAAATCGT
74	5.22e-07	GGACCAACCC	CTTTATTTCCAGT	GGAGATTGCC
45	5.22e-07	GTGATCTCCC	CTTTATTTCCAGT	GGAAGGGGAC

Motif CCWCKACC

Start	P-value		Site
380	2.49e-05	AGGGGGAATG	CCACGACC	AGTTATTCAA
331	5.20e-05	GCATTAATCG	CCTCTACC	CATATGTAAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010033	100.0	412	0	1	412	1	412	0.0	761
aORI10010033	97.391	115	3	206	320	133	247	0.0	196
aORI10010033	97.391	115	3	133	247	206	320	0.0	196
aORI10010033	92.857	42	3	279	320	133	174	2.44e-11	62
aORI10010033	92.857	42	3	133	174	279	320	2.44e-11	62