DoriC

RefSeq

NC_000917.1

DoriC accession number

aORI10010006

OriC length

715 nt

OriC AT content

0.607

The location of oriC region

1429586..1430300 nt

Browse in NCBI

OriC map

OriC sequences

AGTTAATCTTGACTCTCAATAGTAGAAAAGAGTGATGGTCCCTCTACCCTAGTTTTGGGGGGAAGCGAGCGGGAAAACTTAGGGAGGATAAAATTAAAGAAACTCTTTGTAAGCCAGATGTAAATTCAATAGCGCATCAATAAAGGTCTCACCAAATTCCGCAATAATGCTGAAGGGAAGCAGCTGAACCCATGCGATTTTAGGGAGATTTTTACTCGAAACCGTCTTTTTTGTGAGTTCTCGGGAGCAAAGAAGTGGTTGCTTGAAGCCTCTACAAATTGATTGGCTTTATTTCTCGCCAATTGAGTGGAGAGTGAAATCAAATCGTGAAACTTGCAGATTAAATCAAAAAAACATATCTCCAACCCATTTCCAAAATAAACTTTTTTGCGCAAATTTTTATTTCTGAAATCCTCCCTAACCTATTTTTCCAAACTTCCACAGGAAACAAAGGGGTGGTGGCATGCAATTCTGCAGTTTCAAAAATGAATGTTGGTGGCCTGAGTTTGAAGCTTCCAAAACAATCTCAACGTTCGAAAATCGAAAATTGGTTCTTACAGCTGCAAATTTAACTTTTCCATCTTTCTGCACTCCTCTTCACAAACAATCCATTATAAAGCTCCTGTCCCCGAATTTGCCCTTCTGTATCCTTTTCCACATTTTCCACAGGAAACAAAGGGGGTAGGCTTAAGTAATGCATGTGTAATACGAGAGT

ORB AT-rich region

The information of repeat sequences

Motif YCHTTTTYCHNADTTTYCRSRGGAAACRAAGGGG

Start	P-value		Site
648	2.31e-16	CCCTTCTGTA	TCCTTTTCCACATTTTCCACAGGAAACAAAGGGG	GTAGGCTTAA
40	3.60e-15	GAGTGATGGT	CCCTCTACCCTAGTTTTGGGGGGAAGCGAGCGGG	AAAACTTAGG
423	9.83e-15	CCTCCCTAAC	CTATTTTTCCAAACTTCCACAGGAAACAAAGGGG	TGGTGGCATG
225	1.54e-13	CTCGAAACCG	TCTTTTTTGTGAGTTCTCGGGAGCAAAGAAGTGG	TTGCTTGAAG

Motif TGGTGGCMTG

Start	P-value		Site
494	2.68e-07	AAATGAATGT	TGGTGGCCTG	AGTTTGAAGC
457	6.83e-07	AACAAAGGGG	TGGTGGCATG	CAATTCTGCA

Motif TTKCTKNAHTCCTC

Start	P-value		Site
583	5.86e-08	CTTTTCCATC	TTTCTGCACTCCTC	TTCACAAACA
403	9.88e-08	CAAATTTTTA	TTTCTGAAATCCTC	CCTAACCTAT
259	1.75e-07	AAAGAAGTGG	TTGCTTGAAGCCTC	TACAAATTGA
284	1.24e-06	ACAAATTGAT	TGGCTTTATTTCTC	GCCAATTGAG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010006	100.0	715	0	0	1	715	1	715	0.0	1321