DoriC

RefSeq

NC_000916.1

DoriC accession number

aORI10010005

OriC length

347 nt

OriC AT content

0.634

The location of oriC region

1277833..1278179 nt

Browse in NCBI

OriC map

OriC sequences

ATCTAGCCATGAATCAGAGAACTGGATAAGGAACAGCAGGATTTTTTACACTTGAAATTCATCCCTCATGAATTCCCATCGAGGATCCAGATGGTTACACTTGAAATAGATGTCCCACATATATTATTATCGATCAACCTGATTTTAATAAAAACTTTTATCTAATAGTTGGAATAAGAGAATTTACACTTGAAATCTACCACACCCTCAAATCAGGGAATGGTAGTACGGGGCGCTGCCAGCTGAAAAGGTCATCCTGATATTGAATTTCACTGTATCCAGATTTTAGGGCCTTTACTGAAATTTGATGCAGCAGTTTTCTCTAAAAATTTAGTTGAAGTGGTACT

ORB AT-rich region

The information of repeat sequences

Motif TTACACTTGAAATHBAYSHCHC

Start	P-value		Site
46	3.08e-12	GCAGGATTTT	TTACACTTGAAATTCATCCCTC	ATGAATTCCC
95	2.18e-11	ATCCAGATGG	TTACACTTGAAATAGATGTCCC	ACATATATTA
184	2.46e-11	ATAAGAGAAT	TTACACTTGAAATCTACCACAC	CCTCAAATCA

Motif GADCADCCDGAT

Start	P-value		Site
250	1.29e-06	CAGCTGAAAA	GGTCATCCTGAT	ATTGAATTTC
132	1.76e-06	TATTATTATC	GATCAACCTGAT	TTTAATAAAA
81	2.68e-06	AATTCCCATC	GAGGATCCAGAT	GGTTACACTT
233	5.96e-06	GTAGTACGGG	GCGCTGCCAGCT	GAAAAGGTCA
31	1.07e-05	ACTGGATAAG	GAACAGCAGGAT	TTTTTACACT

Motif AATMAGRGAA

Start	P-value		Site
12	2.22e-06	TCTAGCCATG	AATCAGAGAA	CTGGATAAGG
211	3.47e-06	CACACCCTCA	AATCAGGGAA	TGGTAGTACG
173	7.38e-06	TAATAGTTGG	AATAAGAGAA	TTTACACTTG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010005	100.0	347	0	0	1	347	1	347	0.0	641
aORI10010270	91.52	342	19	5	7	346	463	796	0.0	462