DoriC

RefSeq

NC_000854.2

DoriC accession number

aORI10010001

OriC length

697 nt

OriC AT content

0.4046

The location of oriC region

444838..445534 nt

Browse in NCBI

OriC map

OriC sequences

AACCTACACCCGAAACACCAGTAGGATGGAGGCTCAAAATTAAGCTAGAAAGCGGGTCCAGATAGCTAGACTTAGGATGCTCCACAGGAAACGGAGGGGTCCTTATAAACCCCCGGCAACCACGCCACGCCGCACCCCGCAGGAAAGCCCCACACCCCCCAGGTTCCTCTGGAGCATCAGAAGCGTATACTCCTCCCGAATAGTGCTCTTGAAGAATGCCAATATAATGATACAAAAACCCAGTTTTAAACAAATCAAGCTAGAAACAAACAAAGACACACTATAATCCAGAACTGCACAGCCTGAGAGGATCCAGCGGAAAACAGGGGGTGTGGGGGCTTAGTGTGTCAGCTCGCCGTCTCCACAGGAAACGGAGGGGTCGTATACCGGGGGGTTAACAACCTGCGGGAAGCGCATCCACCCCCACCCCCAACCATGAGGAGCCAGAACTAGCTGTCAACCATCACTATGCATACCCGGGAGGCGGCGCCGGCCATAACCCGCCTTCTGTACTTCGGCGGCATTGGGCTAAGCGGTCTCCCCCCGGGCTTCGCGCGGCCCTCACCGCCCGGGGGCCTTGCTCCGCCGGGGGCGGCCGTTTCACCGCATCCCCGGGGTTCCTCTGCGGTTTGCTGCCGCCCTGTTGCCAGGGCGGCCTAGCCGCGTCCTCGACACGCCCCGGGGCCGTGTCGTTTCT

ORB AT-rich region

The information of repeat sequences

Motif TCCACMGGAAACSVRGGGGT

Start	P-value		Site
361	1.54e-12	GCTCGCCGTC	TCCACAGGAAACGGAGGGGT	CGTATACCGG
81	1.54e-12	CTTAGGATGC	TCCACAGGAAACGGAGGGGT	CCTTATAAAC
312	1.01e-09	CCTGAGAGGA	TCCAGCGGAAAACAGGGGGT	GTGGGGGCTT
600	3.58e-09	GGGCGGCCGT	TTCACCGCATCCCCGGGGTT	CCTCTGCGGT

Motif AWATHAWGMTASAAA

Start	P-value		Site
37	2.68e-10	TGGAGGCTCA	AAATTAAGCTAGAAA	GCGGGTCCAG
252	2.56e-09	AGTTTTAAAC	AAATCAAGCTAGAAA	CAAACAAAGA
222	1.28e-08	AAGAATGCCA	ATATAATGATACAAA	AACCCAGTTT

Motif GGSGGCHTWG

Start	P-value		Site
571	1.67e-06	CTCACCGCCC	GGGGGCCTTG	CTCCGCCGGG
334	6.89e-06	CAGGGGGTGT	GGGGGCTTAG	TGTGTCAGCT
651	1.08e-05	CTGTTGCCAG	GGCGGCCTAG	CCGCGTCCTC
517	1.08e-05	TCTGTACTTC	GGCGGCATTG	GGCTAAGCGG

The result of BLAST

Download

subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score
aORI10010001	100.0	697	0	0	1	697	1	697	0.0	1288