DoriC

RefSeq

GCF_000155675.2

Accession number

NC_020911.1

DoriC accession number

ORI97227669

OriC length

118 nt

OriC AT content

0.432203

The location of oriC region

1442..1559 nt

Browse in NCBI

OriC map

OriC sequences

dnaATGGCTGCACGCCCTTGTCTTAGGGCGTTCGACACGCCACAAAATGCTTGTGAACGGGGTAGAAACGGTTAGTTTCACCTTCCCGACCCAATTGGGGCATCAAGGACGGAGACAGGGCCdnaN

dnaaTGGCTGCACGCCCTTGTCTTAGGGCGTTCGACACGCCACAAAATGCTTGTGAACGGGGTAGAAACGGTTAGTTTCACCTTCCCGACCCAATTGGGGCATCAAGGACGGAGACAGGGCCdnan

dnaATGGCTGCACGCCCTTGTCTTAGGGCGTTCGACACGCCACAAAATGCTTGTGAACGGGGTAGAAACGGTTAGTTTCACCTTCCCGACCCAATTGGGGCATCAAGGACGGAGACAGGGCCdnaN

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif TWGTYTYA

Start	P-value		Site
14	2.40e-05	CTGCACGCCC	TTGTCTTA	GGGCGTTCGA
69	3.88e-05	TAGAAACGGT	TAGTTTCA	CCTTCCCGAC

Motif ACMMAAT

Start	P-value		Site
38	3.56e-05	TCGACACGCC	ACAAAAT	GCTTGTGAAC
85	1.68e-04	CACCTTCCCG	ACCCAAT	TGGGGCATCA

Motif CACGCC

Start	P-value		Site
32	3.61e-04	GGGCGTTCGA	CACGCC	ACAAAATGCT
7	3.61e-04	TGGCTG	CACGCC	CTTGTCTTAG

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score