DoriC

RefSeq

GCF_000227705.2

Accession number

NC_019897.1

DoriC accession number

ORI97010024

OriC length

804 nt

OriC AT content

0.506219

The location of oriC region

3988644..3989447 nt

Browse in NCBI

OriC map

OriC sequences

dnaATGACTGTCACTCCTTACCGACTGATCGTCCGCCCCTTCATCTAGCCTCCGTCGTCATCGCACCATTCTCAACATTCCCAGAAAAAGCACAAAAAGGAACAAGCCTCTCCTTCGGCTTGCGTCGTAGGCTCGCAAAGGACAGTTGATGCGCCGAAGCCGGCCGGCACCGCCGCTGTTCGGCTGGAACGATGCGATGTGTCGAAACAAGCAAAAACGGCTGATGCCGTCCCTCCCGGACGGCGCACCCGTTTTGCGGGGAAAGATAAGCCGATGATAAGCGTGAAACTTATAAACTCTTATCTTCTGATGAAGAAAATGAGAGGCGAATCATCCACAATACGAACGTAATCCCGCTGTGAATTATCCATAGGGAGGTGAATTGCTCACAGACTTATCCACAATCTGTTGATAATTTAGAGGGATTTTGCCAGATGTCCACAGCTGGAAGCATATTTATCATAGCAGACCGGGCCCCTGATTTCAACGTTTGCACCGAAACTATCCACAATCCCCGGAATTGTGTATAACATTTATGAACAATGCTCGAAATTGTTGAGAAGTTGTCGACAACCTGTGCCGTTTCGACGGCGTTCGCCGAAAATTATCAACAACCCCCATGTGAGGACAGCGTTTGGCATGGAGAAGGGGGAAACGTTCCGGATATCCTTGAACTTGACTTTGGCGGATGGGTGTGGTTTAATTGTAAAGGCATTTTTCCGGACGGATCGGGGCCGATCTGTCGGCTTGGAAATGTATATTCAACAGATTGTCATGATAGAATTCGGAGCGGGAGGTGTCAGGCAGGrpmH

dnaaTGACTGTCACTCCTTACCGACTGATCGTCCGCCCCTTCATCTAGCCTCCGTCGTCATCGCACCATTCTCAACATTCCCAGAAAAAGCACAAAAAGGAACAAGCCTCTCCTTCGGCTTGCGTCGTAGGCTCGCAAAGGACAGTTGATGCGCCGAAGCCGGCCGGCACCGCCGCTGTTCGGCTGGAACGATGCGATGTGTCGAAACAAGCAAAAACGGCTGATGCCGTCCCTCCCGGACGGCGCACCCGTTTTGCGGGGAAAGATAAGCCGATGATAAGCGTGAAACTTATAAACTCTTATCTTCTGATGAAGAAAATGAGAGGCGAATCATCCACAATACGAACGTAATCCCGCTGTGAATTATCCATAGGGAGGTGAATTGCTCACAGACTTATCCACAATCTGTTGATAATTTAGAGGGATTTTGCCAGATGTCCACAGCTGGAAGCATATTTATCATAGCAGACCGGGCCCCTGATTTCAACGTTTGCACCGAAACTATCCACAATCCCCGGAATTGTGTATAACATTTATGAACAATGCTCGAAATTGTTGAGAAGTTGTCGACAACCTGTGCCGTTTCGACGGCGTTCGCCGAAAATTATCAACAACCCCCATGTGAGGACAGCGTTTGGCATGGAGAAGGGGGAAACGTTCCGGATATCCTTGAACTTGACTTTGGCGGATGGGTGTGGTTTAATTGTAAAGGCATTTTTCCGGACGGATCGGGGCCGATCTGTCGGCTTGGAAATGTATATTCAACAGATTGTCATGATAGAATTCGGAGCGGGAGGTGTCAGGCAGGrpmh

5'-DnaA box-3' 3'-DnaA box-5' Spacer DnaA-trio ATP-DnaA box
AT-rich region GATC CtrA binding motif Fis binding site IHF binding site

The information of repeat sequences

Motif AATTATCMACAATCC

Start	P-value		Site
496	9.56e-09	TTTGCACCGA	AACTATCCACAATCC	CCGGAATTGT
599	1.89e-08	GTTCGCCGAA	AATTATCAACAACCC	CCATGTGAGG
389	3.06e-08	TTGCTCACAG	ACTTATCCACAATCT	GTTGATAATT
325	4.05e-08	ATGAGAGGCG	AATCATCCACAATAC	GAACGTAATC
528	1.66e-07	TGTGTATAAC	ATTTATGAACAATGC	TCGAAATTGT

Motif CCGDSCCKCTCCGHCGGCKTDC

Start	P-value		Site
571	5.47e-10	TGTCGACAAC	CTGTGCCGTTTCGACGGCGTTC	GCCGAAAATT
223	4.70e-09	ACGGCTGATG	CCGTCCCTCCCGGACGGCGCAC	CCGTTTTGCG
726	5.50e-09	CCGGACGGAT	CGGGGCCGATCTGTCGGCTTGG	AAATGTATAT
98	8.38e-09	ACAAAAAGGA	ACAAGCCTCTCCTTCGGCTTGC	GTCGTAGGCT
156	1.61e-08	TGCGCCGAAG	CCGGCCGGCACCGCCGCTGTTC	GGCTGGAACG

Motif TDTAAABKSATTTTKBCDGATG

Start	P-value		Site
701	3.41e-11	GTGGTTTAAT	TGTAAAGGCATTTTTCCGGACG	GATCGGGGCC
412	4.05e-11	CTGTTGATAA	TTTAGAGGGATTTTGCCAGATG	TCCACAGCTG
666	1.61e-09	CCGGATATCC	TTGAACTTGACTTTGGCGGATG	GGTGTGGTTT
287	3.96e-09	GCGTGAAACT	TATAAACTCTTATCTTCTGATG	AAGAAAATGA

Distribution of genes on leading or lagging strand

Distribution of nucleotide on leading or lagging strand

The result of BLAST

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subject_id	identity	aln_length	mismatches	gaps	q_start	q_end	s_start	s_end	e_value	bit_score